PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g06550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 582aa    MW: 64141.3 Da    PI: 7.3742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g06550genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08256276526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd+C +aHg
  Tp5g06550 256 PCPEFRK-GSCPKGDSCEYAHG 276
                8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.13E-1346172IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.58470172IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002570100IPR002110Ankyrin repeat
PfamPF136373.0E-671123No hitNo description
Gene3DG3DSA:1.25.40.207.5E-1471174IPR020683Ankyrin repeat-containing domain
CDDcd002042.04E-1272168No hitNo description
SMARTSM002486.5105140IPR002110Ankyrin repeat
SMARTSM003566.3E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6256277IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4283315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812286310IPR000571Zinc finger, CCCH-type
SMARTSM0035643286309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MCSGPKSNLC SSKTLAEIEL KKEETMVLLE FAACDDLQSF QREIEEKEVD LDETGLWYCR  60
RVGSNQMGLE ERTPLMVAAM YGSKKVLNFI ISTGKSDVNR VCGEERVTAL HCAVAGCSVN  120
MIEVINTLLD ASALANSVDA NGNQPLDLFV RVSRFVATPR KKAVELLLRG GAFVGGGLIN  180
EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE  240
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR  300
KVCFFAHKRE EMRPVNASTG SAVAQSPFNS LEMMPGLSPL AYSSGVSTPP VSPMANSVGS  360
SPRNGGSWQN RVNTLTPPAL QLNGGSRLKS TLSARDMDID MEMEMRLRGF NNAEETFGSY  420
VSSPSRNSQM GQNMNQHYPS SPVRQPPPHH GFDSSAAVAA AVMNARSSAF AKRSLSFKPA  480
AQAAPPSNLS DWGSPSGKLE WGMQGDELNK MRRSVSFGIH GNNNSNNNSN AARDYRNEPD  540
VSWVNSLVKE NVVSERGFGM NERVRIMSWA EQMYREKEQT VA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2268610.0AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBankAL1638320.0AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBankAY0562820.0AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBankBT0086250.0BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403038.10.0hypothetical protein EUTSA_v10005860mg
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLV4NEL10.0V4NEL1_EUTSA; Uncharacterized protein
STRINGAT3G55980.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1